Plot method for netify_comparison objects

renders a pairwise similarity heatmap from the matrix output of compare_networks(). picks an appropriate matrix based on the method the comparison was run with (correlation / qap / jaccard / hamming / spectral). for qap comparisons, the plot renders the qap correlation matrix. p-values remain available in x$significance_tests$qap_pvalues.

Usage

# S3 method for class 'netify_comparison'
plot(x, ...)

Arguments

x

a netify_comparison object returned by compare_networks().

...

additional arguments:

metric

which matrix to render. default: auto-pick the primary metric for the comparison's method. pass "correlation" / "jaccard" / "hamming" / "qap" / "spectral" to override.

show_values

logical. overlay numeric values on each tile. default TRUE when n <= 6, else FALSE.

palette

two-color gradient endpoints. default c("#f0f0f0", "#1f78b4") for correlation-like metrics.

Value

a ggplot object.

Author

cassy dorff, shahryar minhas